Carrot Cake Cupcakes with Cream Cheese Frosting

Published February 27, 2016. Updated February 28, 2025

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Carrot Cake Cupcakes are one of my all-time favorite cupcake recipes! They’re soft, tender, and perfectly moist, and their sweet, spiced flavor is absolutely perfect. The cream cheese frosting and crunchy chopped pecans are the perfect finishing touch. A must have recipe—perfect for an Easter dessert! 

Carrot Cake Cupcakes with Cream Cheese Frosting

Making These Carrot Cake Cupcakes

Spring is in the air! Okay, I know we’ve still got a ways but it’s been starting to warm up, and did you know Easter is in March this year? So what does that mean for me?? Time for carrot cake cupcakes!

I’ve already shared this recipe before (2 years ago) but I just decided to update things and add a new spin on the decoration to them, because I’m just now realizing how amazing Marzipan is! It’s ready to go, as in you don’t need to mix anything up, just tint it the color you’d like. Plus, it’s not made of nasty ingredients, just almonds, sugar or honey and wheat starch, and the taste and texture reminds me of macarons.

So these tiny little carrots are made out of Marzipan, a little food color, the faintest amount of cocoa powder, and some fresh parsley.

Here is a video on how to make the shapes if you find the directions confusing. Make smaller than listed in the video, though, and dip the toothpick in cocoa before rolling over carrots.

I hope you love this Carrot Cake Cupcake recipe as much as my family and I do! I’d live on them if I could. You’ll find me licking up all the moist crumbs from my plate!

Carrot Cake Cupcake Ingredients

For the carrot cupcakes: 

  • All-purpose flour
  • Baking soda and baking powder
  • Salt
  • Ground cinnamon
  • Ground nutmeg
  • Ground cloves
  • Finely shredded or grated carrots
  • Granulated sugar and brown sugar
  • 2 eggs
  • Unsweetened applesauce
  • Vanilla extract
  • Vegetable oil or canola oil
  • Raisins (optional)

For the cream cheese frosting: 

  • Cream cheese
  • Butter
  • Vanilla extract
  • Powdered sugar
  • Chopped pecans or chopped walnuts (for decorating)

Marzipan Carrots for carrot cake cupcakes

How to Make Carrot Cake Cupcakes

Instructions

  • Preheat oven to 350. Use cupcake liners to prepare the pan.
  • Whisk dry ingredients including spices in a large bowl.
  • Mix sugars and wet ingredients in the bowl of a stand mixer.
  • Mix in half the dry ingredients.
  • Toss carrot shreds with remaining dry ingredients, then blend into batter. Be sure to scrape the sides of the bowl.

Showing how to make carrot cake cupcakes.

  • Divide mixture among paper lined 12-cup muffin pan and bake until set.
  • Let cool completely on a wire rack.

Carrot Cake Cupcakes with Cream Cheese Frosting | Cooking Classy

  • Once cool, make cream cheese frosting in a medium bowl.
  • Pipe or spread frosting over cooled cupcakes.

Adding cream cheese frosting to carrot cake cupcakes.

  • Decorate as desired. I like to add chopped pecans around the edges of the frosting and finish with a marzipan or fondant carrot.

Carrot Cake Cupcakes with Cream Cheese Frosting | Cooking Classy

How to Make Cream Cheese Frosting

  • Whip together butter and cream cheese until light and fluffy.
  • Add in the vanilla extract and stir to combine.
  • Slowly add in the powdered sugar with the mixer on a low speed. Continue whipping the homemade cream cheese frosting until fully combined.

Can I Decorate the Cupcakes With Another Type of Nut?

Yes, of course. Feel free to use any crushed nuts you have on hand. Walnuts and pecans would both complement the cream cheese frosting.

How to Store Cupcakes

Because of the cream cheese frosting, I recommend storing these carrot cake cupcakes in the refrigerator. Then enjoy chilled or let rest at room temperature before serving.

Tips for the Best Carrot Cake Cupcakes

  • If the frosting is slightly runny after making it, freeze in your freezer it for a few minutes to help it solidify. Then frost before the thaw can make it runny again!
  • To ensure that the cream cheese frosting whips up properly, the butter and cream cheese should both be almost room temperature.
  • Double check that your applesauce is unsweetened. Otherwise these cupcakes will be too sweet!
  • Use a box grater or food processor to create the size of carrot shreds you prefer.

More Carrot Cake Recipes You’ll Love:

Carrot Cake Cupcakes with Cream Cheese Frosting | Cooking Classy

16 Quick & Easy 30 Minute Recipes! (plus weekly recipe updates)

4.91 from 11 votes

Carrot Cake Cupcakes with Cream Cheese Frosting

Carrot Cake Cupcakes are one of my all time favorite cupcake recipes! They're soft and tender, perfectly moist, their sweet, spiced flavor is absolutely perfect and the cream cheese frosting and crunchy chopped pecans is the perfect finishing touch. A must have recipe!
Servings: 12
Prep35 minutes
Cook20 minutes
Cool1 hour
Ready in: 55 minutes

Ingredients

Cream Cheese Frosting

Optional carrots for decoration

  • 50 g Marzipan (about 1/4 cup)
  • Orange gel food coloring
  • Cocoa powder (I used Dutch processed)
  • 12 small curly parsley stems

Instructions

  • For the cupcakes: Preheat oven to 350 degrees. In a mixing bowl, whisk together flour, baking soda, baking powder, salt, cinnamon, and nutmeg, set aside.
  • In a separate large mixing bowl, whisk together granulated sugar and brown sugar, then add eggs and using an electric hand mixer, blend mixture on low speed 30 seconds, until slightly pale. 
  • Mix in applesauce and vanilla extract. With mixer running on low speed, slowly pour in vegetable oil and mix until combined, then mix 20 seconds longer. 
  • Mix in half of the dry ingredients, then pour the shredded carrots into the bowl with the remaining flour mixture and toss in flour mixture to coat carrots (they'll clump together a bit but that's fine). Pour carrot mixture into the batter and blend until evenly combined.
  • Pour batter into paper-lined muffin cups, filling each cup about 3/4 full. Bake in preheated oven until toothpick inserted into center of cupcake comes out clean, about 19 - 21 minutes. Cool in muffin tin several minutes then transfer to a wire rack and cool completely.
  • For the frosting: Using an electric mixer whip together butter and cream cheese on medium-high speed until smooth and fluffy. Mix in vanilla extract. 
  • With mixer running on low speed, slowly add powdered sugar and beat until well blended and smooth*. Frost cupcakes with cream cheese frosting then immediately roll edges of frosting in chopped pecans.
  • For the optional carrot decoration: Tint marzipan with orange gel coloring and knead to evenly incorporate color. Separate small pieces at a time (I did 4g carrots) then roll into carrot shapes (roll a tapered log shape).
  •  Dip a toothpick lightly in cocoa powder, shaking of excess then gently roll carrot across toothpick (in random places) while slightly rotating to make slight indentations (to give it that natural look).
  • Poke a small hole in the top of each carrot and insert parsley. Gently press carrots into frosting on tops of cupcakes. 
  • Store in an airtight container in refrigerator. Allow to rest at room temperature until no longer cold before serving.

Notes

  • *If frosting is slightly runny freeze in 3 minute increments then mix again and repeat if needed. 
Nutrition Facts
Carrot Cake Cupcakes with Cream Cheese Frosting
Amount Per Serving
Calories 540 Calories from Fat 261
% Daily Value*
Fat 29g45%
Saturated Fat 17g106%
Cholesterol 68mg23%
Sodium 187mg8%
Potassium 165mg5%
Carbohydrates 67g22%
Fiber 1g4%
Sugar 53g59%
Protein 4g8%
Vitamin A 3240IU65%
Vitamin C 1.1mg1%
Calcium 54mg5%
Iron 1.2mg7%
* Percent Daily Values are based on a 2000 calorie diet.
Nutrition values are estimates only. See full disclaimer here.

 

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124 Comments

  • Nan

    Thanks for this recipe — I’ve become quite dependent on it! But now I need to make a carrot cake, not cupcakes, and I don’t want to stray to far from this recipe. In your post you noted that you adapted this recipe specifically for cupcakes. Can you please tell me how best to change it back to a (layer) cake? Thanks for your help!

    • Jaclyn

      Jaclyn Bell

      Mostly I just reduce the leavening and added a little more flour but it should work fine as a cake as is too, the only thing I may do is cut back on the flour 1/4 cup after doubling.

      • Nan

        Thanks for your help! I went ahead and tried it as carrot cake for Easter with the original recipe, and it was wonderful. Instead of doubling, I made it once for each 8″ layer, just to be safe. With Cinnamon Cream Cheese Frosting…yum!
        http://pinterest.com/pin/289074869809013737/

          • Nan

            Sorry I can’t remember (I made it 3 years ago). But I’m sure i baked it just until it tested done w a toothpick and had just started to pull away from the side of the pan. I’d start checking at 15 min, but it could take as long as 30?

  • Erika

    Hey Jaclyn, I want to make these for my sister’s 10th year anniversary party and I was wondering if you think they will taste just as delicious without the nuts? I have to omit the nuts because a lot of people have a nut allergy. Also I was wondering if the frosting is more sweet the tangy. The frosting I use for my red velvet cupcakes calls for 8 oz of cream cheese, 4 tablespoons of butter, 2 tsp of vanilla extract, and 2 cups of powdered sugar. I’d like to think that recipe is right on the money as far as sweetness, therefore I’m afraid your frosting might be too sweet for me, but I’m willing to try it, what do you think?

    Thanks!

    • Jaclyn

      Jaclyn Bell

      I’ve tried cream cheese frosting with many different ratios so I’d say definitely add a little more cream cheese and reduce the powdered sugar, and leaving out nuts shouldn’t be a problem. I hope everyone loves them!

  • Jill

    I made these to take to a party today, and they were a huge hit. I actually made mini-cupcakes and decorated them the same way, except I used a graduated side-to-side squiggle because the carrots had to be so tiny. Keeping the nuts on top (rather than in the batter) was a great way to do it because I could also decorate some without nuts, so that the nut-allergic/averse could eat them.

    I got about 4 1/2 dozen minis out of the batch, and I doubled the cream cheese frosting so I could be generous with it and still have leftovers to nibble on all week. Sadly, I only had about 1/2 cup of frosting leftover after the decorating (and, I’m guessing, a fair amount of sampling by the family while I wasn’t looking…).

    The only other thing I changed was to add 1/8 tsp of allspice, which is in my usual carrot cake recipe along with the cinnamon and nutmeg. I’d always wanted to make cupcakes out of it, but it’s so moist and chunky that I couldn’t see how I could begin to adjust it for the smaller scale. This was perfect!

  • Sherilyn

    Would it be alright to incorporate the pecans into the batter instead of just along the edges?

    • Jaclyn

      Jaclyn Bell

      That should be fine I’d chop them up pretty small though so they don’t just sink.

  • Lauren rinke

    When doubling the recipe, should i double the vegetable oil? That sounds like a lot of vegetable oil, especially with the apple sauce

    • Jaclyn

      Jaclyn Bell

      If you are doubling the recipe than yes I would double everything including the vegetable oil. I hope you love it Lauren!

  • Danielle

    How did you frost the top if the cupcakes in order to get the height as well as evenness across the top and all the way around? Did you start with a piping bag and then smoothed out the top or a different way?
    Making them this week and I’m so excited to try them out!!

    • Jaclyn

      Jaclyn Bell

      I just spooned a generous amount on then leveled out the top and rounded the edges. I hope you love them!

  • Heimi

    Hi there! The cupcakes look so pretty! I don’t take eggs, anything I can substitute the eggs with?

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